PUBLICATIONS

PANINI: Combined protein and nucleic acid imaging in tissues

Sizun Jiang.

Nature Reviews Immunology

2024 March 28

A Hitchhiker’s guide to high-dimensional tissue imaging with multiplexed ion beam imaging

Yao Yu Yeo, Precious Cramer, Addison Deisher, Yunhao Bai, Bokai Zhu, Wan-Jin Yeo, Margaret A Shipp, Scott J Rodig, Sizun Jiang.

Academic Press

2024 March 10

Epstein-Barr Virus Orchestrates Spatial Reorganization and Immunomodulation within the Classic Hodgkin Lymphoma Tumor Microenvironment

Yao Yu Yeo, Huaying Qiu, Yunhao Bai, Bokai Zhu, Yuzhou Chang, Jason Yeung, Hendrik A. Michel, Kyle Wright, Muhammad Shaban, Sam Sadigh, Dingani Nkosi, Vignesh Shanmugam, Philip Rock, Stephanie Pei Tung Yiu, Precious Cramer, Julia Paczkowska, Pierre Stephan, Guanrui Liao, Amy Y. Huang, Hongbo Wang, Han Chen, Leonie Frauenfeld, Bidisha Mitra, Benjamin E. Gewurz, Christian M. Schürch, Bo Zhao, Garry P. Nolan, Baochun Zhang, Alex K. Shalek, Michael Angelo, Faisal Mahmood, Qin Ma, W. Richard Burack, Margaret A. Shipp, Scott J. Rodig, Sizun Jiang.

bioRxiv

2024 March 07

A Spatial Multi-Modal Dissection of Host-Microbiome Interactions within the Colitis Tissue Microenvironment

Bokai Zhu, Yunhao Bai, Yao Yu Yeo, Xiaowei Lu, Xavier Rovira-Clavé, Han Chen, Jason Yeung, Georg K Gerber, Mike Angelo, Alex K Shalek, Garry P Nolan, Sizun Jiang.

bioRxiv

2024 March 06

Graph Fourier transform for spatial omics representation and analyses of complex organs

Yuzhou Chang, Jixin Liu, Yi Jiang, Anjun Ma, Yao Yu Yeo, Qi Guo, Megan McNutt, Jodran Krull, Scott J. Rodig, Dan H. Barouch, Garry Nolan, Dong Xu, Sizun Jiang, Zihai Li, Bingqiang Liu, Qin Ma.

Nature portfolio

2024 February 15

A spatial cell atlas of neuroblastoma reveals developmental, epigenetic and spatial axis of tumor heterogeneity

Anand G Patel, Orr Ashenberg, Natalie B Collins, Åsa Segerstolpe, Sizun Jiang, Michal Slyper, Xin Huang, Chiara Caraccio, Hongjian Jin, Heather Sheppard, Ke Xu, Ti-Cheng Chang, Brent A Orr, Abbas Shirinifard, Richard H Chapple, Amber Shen, Michael R Clay, Ruth G Tatevossian, Colleen Reilly, Jaimin Patel, Marybeth Lupo, Cynthia Cline, Danielle Dionne, Caroline B M Porter, Julia Waldman, Yunhao Bai, Bokai Zhu, Irving Barrera, Evan Murray, Sébastien Vigneau, Sara Napolitano, Isaac Wakiro, Jingyi Wu, Grace Grimaldi, Laura Dellostritto, Karla Helvie, Asaf Rotem, Ana Lako, Nicole Cullen, Kathleen L Pfaff, Åsa Karlström, Judit Jané-Valbuena, Ellen Todres, Aaron Thorner, Paul Geeleher, Scott J Rodig, Xin Zhou, Elizabeth Stewart, Bruce E Johnson, Gang Wu, Fei Chen, Jiyang Yu, Yury Goltsev, Garry P Nolan, Orit Rozenblatt-Rosen, Aviv Regev, Michael A Dyer.

bioRxiv

2024 January 16

MAPS: pathologist-level cell type annotation from tissue images through machine learning

Shaban M*, Bai Y*, Qiu H*, Mao S, Yeung J, Yeo YY, Shanmugam V, Chen H, Zhu B, Weirather JL, Nolan GP, Shipp MA, Rodig SJ, Jiang S#, Mahmood F#.

Nat Commun

2024 January 03

Expanded vacuum-stable gels for multiplexed high-resolution spatial histopathology

Bai Y, Zhu B, Oliveria JP, Cannon BJ, Feyaerts D, Bosse M, Vijayaragavan K, Greenwald NF, Phillips D, Schürch CM, Naik SM, Ganio EA, Gaudilliere B, Rodig SJ, Miller MB, Angelo M, Bendall SC, Rovira-Clavé X#, Nolan GP#, Jiang S#.

Nat Commun

2023 September 14

Morphologic and molecular analysis of liver injury after SARS-CoV-2 vaccination reveals distinct characteristics

Uzun S, Zinner C, Beenen AC, Alborelli I, Bartoszek EM, Yeung J, Calgua B, Reinscheid M, Bonsert P, Stalder AK, Haslbauer J, Vosbeck J, Mazzucchelli L, Hoffmann T, Terracciano LM, Hutter G, Manz M, Panne I, Böttler T, Hofmann M, Bengsch B, Heim MH, Bernsmeier C, Jiang S, Tzankov A, Beretta-Piccoli BT, Matter MS.

J Hepatol

2023 June 19

Diffuse Large B-cell Lymphomas Have Spatially-Defined Tumor-Immune Microenvironments Revealed by High-Parameter Imaging

Wright K*, Weirather JL*, Jiang S*, Kao KZ, Sigal Y, Giobbie-Hurder A, Shipp MA, Rodig SJ.

Blood Adv

2023 June 19