PUBLICATIONS

MAPS: pathologist-level cell type annotation from tissue images through machine learning

Shaban M*, Bai Y*, Qiu H*, Mao S, Yeung J, Yeo YY, Shanmugam V, Chen H, Zhu B, Weirather JL, Nolan GP, Shipp MA, Rodig SJ, Jiang S#, Mahmood F#.

Nat Commun 15, 28 (2024). https://doi.org/10.1038/s41467-023-44188-w

2024 January 03

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Expanded vacuum-stable gels for multiplexed high-resolution spatial histopathology

Bai Y, Zhu B, Oliveria JP, Cannon BJ, Feyaerts D, Bosse M, Vijayaragavan K, Greenwald NF, Phillips D, Schürch CM, Naik SM, Ganio EA, Gaudilliere B, Rodig SJ, Miller MB, Angelo M, Bendall SC, Rovira-Clavé X#, Nolan GP#, Jiang S#.

Nat Commun. 2023 September 14

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Morphologic and molecular analysis of liver injury after SARS-CoV-2 vaccination reveals distinct characteristics

Uzun S, Zinner C, Beenen AC, Alborelli I, Bartoszek EM, Yeung J, Calgua B, Reinscheid M, Bonsert P, Stalder AK, Haslbauer J, Vosbeck J, Mazzucchelli L, Hoffmann T, Terracciano LM, Hutter G, Manz M, Panne I, Böttler T, Hofmann M, Bengsch B, Heim MH, Bernsmeier C, Jiang S, Tzankov A, Beretta-Piccoli BT, Matter MS.

J Hepatol.

2023 June 19

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Diffuse Large B-cell Lymphomas Have Spatially-Defined Tumor-Immune Microenvironments Revealed by High-Parameter Imaging

Wright K*, Weirather JL*, Jiang S*, Kao KZ, Sigal Y, Giobbie-Hurder A, Shipp MA, Rodig SJ.

Blood Adv.

2023 June 19

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A DNA tumor virus globally reprograms host 3D genome architecture to achieve immortal growth

Wang C*, Liu X*, Liang J*, Narita Y*, Ding W*, Li D, Zhang L, Wang H, Leong MML, Hou I, Gerdt C, Jiang C, Zhong Q, Tang Z, Forney C, Kottyan L, Weirauch MT, Gewurz BE, Zeng MS, Jiang S#, Teng M#, Zhao B#.

Nat Commun.

2023 June 19

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Robust single-cell matching and multimodal analysis using shared and distinct features

Zhu B*, Chen S*, Bai Y, Chen H, Liao G, Mukherjee N, Vazquez G, McIlwain DR, Tzankov A, Lee IT, Matter MS, Golstev Y, Ma Z#, Nolan GP#, Jiang S#

Nature Methods 2023

2023 January 09

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Glucose dissociates DDX21 dimers to regulate mRNA splicing and tissue differentiation

Miao W, Porter DF, Lopez-Pajares V, Siprashvili Z, Meyers RM, Bai Y, Nguyen DT, Ko LA, Zarnegar BJ, Ferguson ID, Mills MM, Jilly-Rehak CE, Wu CG, Yang YY, Meyers JM, Hong AW, Reynolds DL, Ramanathan M, Tao S, Jiang S, Flynn RA, Wang Y, Nolan GP, Khavari PA.

Cell. 2023 Jan 5

2023 January 09

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SARS-CoV-2 replication in airway epithelia requires motile cilia and microvillar reprogramming

Wu CT, Lidsky PV, Xiao Y, Cheng R, Lee IT, Nakayama T, Jiang S, He W, Demeter J, Knight MG, Turn RE, Rojas-Hernandez LS, Ye C, Chiem K, Shon J, Martinez-Sobrido L, Bertozzi CR, Nolan GP, Nayak JV, Milla C, Andino R, Jackson PK.

Cell. 2023

2023 January 09

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Spatial epitope barcoding reveals clonal tumor patch behaviors

Rovira-Clavé X*, Drainas AP*, Jiang S*, Bai Y, Baron M, Zhu B, Dallas AE, Lee MC, Chu TP, Holzem A, Ayyagari R, Bhattacharya D, McCaffrey EF, Greenwald NF, Markovic M, Coles GL, Angelo M, Bassik MC, Sage J#, Nolan GP#

Cancer Cell. 2022 Oct 12 2022 October 20

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A real-time GPU-accelerated parallelized image processor for large-scale multiplexed fluorescence microscopy data

Lu G, Baertsch MA, Hickey JW, Goltsev Y, Rech AJ, Mani L, Forgó E, Kong C, Jiang S, Nolan GP, Rosenthal EL.

Front Immunol. 2022

2022 October 20

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