PUBLICATIONS

PASTA: versatile tyramide-oligonucleotide amplification for multimodal spatial biology

Hendrik A Michel, Paige McCallum, Wenrui Wu, Huaying Qiu, Jia Le Lee, Shuli Luo, Chi Ngai Chan, Johanna Schaffenrath, Yao Yu Yeo, Stephanie Pei Tung Yiu, Yang Wang, Lindsay Parmelee, Hongbo Wang, Tania Pannellini, Melinda Burgess, Nourhan El Ahmar, Zoe Xiaozhu Zhang, Colm Keane, Tony Kiat Hon Lim, Sabina Signoretti, Sonia Victoria Del Rincon, Bo Zhao, David R McIlwain, Yunhao Bai, Fei Chen, Roberto Chiarle, Sizun Jiang

Nature Methods. 2026

2026 August 17

Follicular Lymphoma Transformation is Characterized by Cytokine-associated Remodeling of Stromal and Macrophage Compartments

Nicholas J Haradhvala*, Stephanie Pei Tung Yiu*, Laura Beckmann*, Sam Sadigh, Zachary Leibowitz, Erik Landolsi, Santiago Rivero, Stephanie L Deng, Sabrina Hu, Mingzeng Zhang, Daniel Filip, Amber Pospistle, Yao Yu Yeo, Katie Maurer, Johan Gustafsson, Kai Stewart, Vignesh Shanmugam, McKayla Van Orden, Wesley S Lu, Shuqiang Li, Kenneth J Livak, Huaying Qiu, Ankit Basak, Alex K Shalek, Brian P Danysh, Mikaela McDonough, Satyen H Gohil, Yue Ren, Yinglu Zhou, Donna S Neuberg, Svitlana Tyekucheva, Scott J Rodig, Eric D Jacobsen, Marek Mraz, Mark A Murakami, Habibe Kurt, Catherine J Wu, Gad Getz^#, Sizun Jiang^#, Erin M Parry^#

Cancer Discovery. 2026

2026 August 04

Same-Slide Spatial Multi-Omics Integration with IN-DEPTH Reveals Tumor Virus-Linked Spatial Reorganization of the Tumor Microenvironment

Stephanie Pei Tung Yiu*, Yuzhou Chang*, Yao Yu Yeo*, Huaying Qiu*, Wenrui Wu*, Hendrik A Michel, Xiaojie Jin, Rongting Huang, Shoko Kure, Lindsay Parmelee, Shuli Luo, Precious Cramer, Jia Le Lee, Yang Wang, Zhangxin Zhao, Jason Yeung, Nourhan El Ahmar, Berkay Simsek, Razan Mohanna, McKayla Van Orden, Wesley S Lu, Kenneth J Livak, Shuqiang Li, Ce Gao, Melinda Burgess, Colm Keane, Jahanbanoo Shahryari, Leandra G Kingsley, Reem N Al-Humadi, Sahar Nasr, Dingani Nkosi, Sam Sadigh, Philip Rock, Leonie Frauenfeld, Louisa Kaufmann, Bokai Zhu, Ankit Basak, Nagendra Dhanikonda, Chi Ngai Chan, Jordan Krull, Ye Won Cho, Chia-Yu Chen, Jonathan Brown, Hongbo Wang, Bo Zhao, Jia-Ying Joey Lee, Lit-Hsin Loo, David M Kim, Vassiliki A Boussiotis, Baochun Zhang, Kevin Wei, Alex K Shalek, Brooke E Howitt, Sabina Signoretti, F Stephen Hodi, W Richard Burack, Scott J Rodig, Qin Ma^#, Sizun Jiang^#

Cancer Discovery. 2026

2026 August 03

Coordinated immune-epithelial dynamics in the nasal epithelium protect against respiratory virus infection

Yao Yu Yeo*, Hsin-Yi Chen*, Bokai Zhu, Yang Wang, Ivan T Lee, Tsuguhisa Nakayama, Yuchen Wang, Huaying Qiu, Kate B Juergens, Sei Chung, Carol H Yan, Clara S Kummerer, Hendrik A Michel, Andrew Z Ma, Wenrui Wu, Jayakar V Nayak, Garry P Nolan, David R McIlwain, Alexandar Tzankov, Matthias S Matter^#, Chien-Ting Wu^#, Sizun Jiang^#

bioRxiv. 2026

2026 June 09

Epstein-Barr virus orchestrates spatial reorganization and immunomodulation in the classic Hodgkin lymphoma tumor microenvironment

Yao Yu Yeo*, Huaying Qiu*, Yunhao Bai*, Bokai Zhu*, Yuzhou Chang, Fabio Iannelli, Stephanie Pei Tung Yiu, Jason Yeung, Hendrik A Michel, Yuchen Wang, Yang Wang, Wenrui Wu, Kyle Wright, Muhammad Shaban, Sam Sadigh, Dingani Nkosi, Vignesh Shanmugam, Philip Rock, Precious Cramer, Julia Paczkowska, Pierre Stephan, Guanrui Liao, Amy Y Huang, Hongbo Wang, Han Chen, Leonie Frauenfeld, Louisa Kaufmann, Stefano Pileri, Bidisha Mitra, Benjamin E Gewurz, Bo Zhao, Garry P Nolan, Baochun Zhang, Alex K Shalek, Michael Angelo, Christian M Schürch, Faisal Mahmood, Roberto Chiarle, Qin Ma, W Richard Burack, Margaret A Shipp, Scott J Rodig^#, Sizun Jiang^#

Cell Reports Medicine. 2026

2026 March 31

Toward Computationally Complete Spatial Omics

Wei Li^#, Liran Mao, Yunhe Liu, Fuduan Peng, Nadja Sachs, Wenrui Wu, Stephanie Pei Tung Yiu, Hanying Yan, Amelia Schroeder, Xiaokang Yu, Kaitian Jin, Shunzhou Jiang, Zihao Chen, Melanie L Loth, Lorena Gomez, Idania Lubo, Niklas Blank, Laith Z Samarah, Ankit Basak, Ye Won Cho, Chia-Yu Chen, David M Kim, Alex K Shalek, Luisa Maren Solis Soto, Joshua D Rabinowitz, Muredach P Reilly, Xuyu Qian, Christoph A Thaiss, Lars Maegdefessel, Linghua Wang, Humam Kadara, Sizun Jiang^#, Yanxiang Deng^#, Mingyao Li^#

bioRxiv. 2026

2026 March 05

SARS-CoV-2 Nsp15 facilitates immune evasion and viral replication by limiting multiple host innate immune pathways, including cGAS-STING

Hsin-Ping Chiu, Yao Yu Yeo, Tsoi Ying Lai, Chuan-Tien Hung, Shreyas Kowdle, Griffin D Haas, Sizun Jiang, Weina Sun, Benhur Lee

Journal of General Virology. 2026

2026 March 01

Single-Cell and Spatial Methods for Multimodal Functional Glycan Profiling in Tissues

Ankit Basak*, Carolina Ortiz-Cordero*, Stephanie Pei Tung Yiu*, Sidney Allison, Sarah Sweeting, Feng Shan, Yuzhou Evelyn Tong, Rajeev Chorghade, Alexxandra Sosa-Guir, Somkene D. Alakwe, Constantine Tzouanas, Bokai Zhu, Adele Gabba, Yao Yu Yeo, Wenrui Wu, Huaying Qiu, Yuzhou Chang, Cankun Wang, Eric J. Carpenter, Shreyas Gupta, Guilherme Meira Lima, Lindsay Parmelee, Philip Rock, Yi Zhang, Ratmir Derda, W Richard Burack, Qin Ma, Alex K. Shalek^#, Sizun Jiang^#, Laura Kiessling^#

bioRxiv. 2026

2026 February 23

Counteracting FOX proteins epigenetically control the herpesvirus lytic-latent balance

Yuhang Xiang, Xiyuan Yang, Juncheng Zhang, Fujun Hou, Yue Deng, Hui Fu, Hyung Suk Oh, Qiongyan Wang, Siyu Chen, Zeyu Sun, Biswajit Das, Yao Yu Yeo, Jean M Pesola, Pritha Sen, Sizun Jiang, David M Knipe, Donald M Coen, Dongli Pan

Nature Communications. 2026

2026 February 02

Inferring high-fat dietary patterns from electronic health record data using machine learning

Ya-Yun Yeh, Hsin-Yueh Lin, Jingchuan Guo, Ramon C Sun, Sizun Jiang, Jiang Bian, Hao Dai

JAMIA Open. 2026

2026 January 07