PUBLICATIONS
Multi-scaled Transcriptomics of Chronically Inflamed Nasal Epithelium reveals Immune-Epithelial Dynamics and Tissue Remodeling in Nasal Polyp Formation
Guanrui Liao*, Tsuguhisa Nakayama*, Bokai Zhu*, Ivan T. Lee*, Jason Yeung, Yao Yu Yeo, Yuzhou Chang, Cankun Wang, Steven Chun-Kang Liao, Dingani Nkosi, Axel Renteria, Dawn T. Bravo, Jonathan B. Overdevest, Carol H. Yan, David Zarabanda, Philip A. Gall, Sachi S. Dholakia, Nicole A. Borchard, Angela Yang, Dayoung Kim, Zara M. Patel, Peter H. Hwang, Dhananjay Wagh, John Coller, Katie M. Phillips, Michael T. Chang, Matt Lechner, Zihai Li, Te-Huei Yeh, Garry Nolan, Maria Serena Longhi, Vassiliki Boussiotis, Dan H. Barouch, Qin Ma, Jayakar V. Nayak#, Sizun Jiang#
Immunity. 2025 Sep 12:S1074-7613(25)00372-3. doi: 10.1016/j.immuni.2025.08.009. Epub ahead of print. PMID: 40945518.
2025 August 18 SEE MORE >>>A Foundation Model for Spatial Proteomics
Muhammad Shaban*, Yuzhou Chang*, Huaying Qiu**, Yao Yu Yeo**, Andrew H. Song**, Guillaume Jaume**, Yuchen Wang, Luca L. Weishaupt, Tong Ding, Anurag Vaidya, Abdallah Lamane, Daniel Shao, Mohammed Zidane, Yunhao Bai, Paige McCallum, Shuli Luo, Wenrui Wu, Yang Wang, Precious Cramer, Chi Ngai Chan, Pierre Stephan, Johanna Schaffenrath, Jia Le Lee, Hendrik A. Michel, Caiwei Tian, Cristina Almagro-Perez, Sophia J. Wagner, Sharifa Sahai, Ming Y. Lu, Richard J. Chen, Andrew Zhang, Mark Edward M. Gonzales, Ahmad Makky, Jia-Ying Joey Lee, Hao Cheng, Nourhan El Ahmar, Sayed Matar, Maximilian Haist, Darci Phillips, Yuqi Tan, Garry P. Nolan, W. Richard Burack, Jacob D. Estes, Jonathan T.C. Liu, Toni K Choueiri, Neeraj Agarwal, Marc Barry, Scott J. Rodig, Long Phi Le, Georg Gerber, Christian M. Schürch, Fabian J. Theis, Youn H Kim, Joe Yeong, Sabina Signoretti, Brooke E. Howitt, Lit-Hsin Loo, Qin Ma, Sizun Jiang#, Faisal Mahmood#
arXiv:2506.03373
2025 August 18 SEE MORE >>>The tumor microenvironment’s role in the response to immune checkpoint blockade
Konstantinos Aliazis, Anthos Christofides, Rushil Shah, Yao Yu Yeo, Sizun Jiang, Alain Charest, Vassiliki A Boussiotis
Nat Cancer. 2025 Jun;6(6):924-937. doi: 10.1038/s43018-025-00986-3.
2025 August 18 SEE MORE >>>Antisense to human CD39 dysregulates immune metabolism in inflammatory bowel disease
Lina Zhang, Cortney Cagle, Du Hanh Nguyen, Graziela Scheuer Gomes, Barbora Gromova, Eva Csizmadia, Arian Karimitar, Ghee Rye Lee, Guanqing Chen, Efi Kokkotou, Laurie Grossberg, Sizun Jiang, Adam S Cheifetz, Satya K Kota, Maria Serena Longhi
Cell Mol Immunol. 2025 Jul;22(7):730-742. doi: 10.1038/s41423-025-01295-6.
2025 August 18 SEE MORE >>>CellLENS enables cross-domain information fusion for enhanced cell population delineation in single-cell spatial omics data
Bokai Zhu*, Sheng Gao*, Shuxiao Chen*, Yuchen Wang, Jason Yeung, Yunhao Bai, Amy Y Huang, Yao Yu Yeo, Guanrui Liao, Shulin Mao, Zhenghui G Jiang, Scott J Rodig, Ka-Chun Wong, Alex K Shalek, Garry P Nolan#, Sizun Jiang#, Zongming Ma#
Nat Immunol. 2025 Jun;26(6):963-974. doi: 10.1038/s41590-025-02163-1.
2025 August 18 SEE MORE >>>Points to Consider From the ESTP Pathology 2.0 Working Group: Overview on Spatial Omics Technologies Supporting Drug Discovery and Development
Kerstin Hahn, Bettina Amberg, Josep M Monné Rodriguez, Mieke Verslegers, Byunghak Kang, Hans Wils, Chandra Saravanan, Dinesh S Bangari, Simon Y Long, Sameh A Youssef, Benedek Pesti, Johanna Schaffenrath, Alberto Valdeolivas, Nadine Kumpesa, José A Galván, Marion Richardson, Nicolas Giroud, Leo Kunz, Inês Berenguer Veiga, Michael Bscheider, Precious Cramer, Sizun Jiang, Robert Kreutzer, Enrico Vezzali, Seong-Wook Yun, Sven Rottenberg, Bjoern Jacobsen
Toxicol Pathol. 2025 Jan;53(1):107-129. doi: 10.1177/01926233241311258.
2025 August 18 SEE MORE >>>A multi-omics spatial framework for host-microbiome dissection within the intestinal tissue microenvironment
Bokai Zhu, Yunhao Bai, Yao Yu Yeo, Xiaowei Lu, Xavier Rovira-Clavé, Han Chen, Jason Yeung, Dingani Nkosi, Jonathan Glickman, Antonio Delgado-Gonzalez, Georg K Gerber, Mike Angelo, Alex K Shalek, Garry P Nolan#, Sizun Jiang#
Nat Commun. 2025 Jan 31;16(1):1230. doi: 10.1038/s41467-025-56237-7.
2025 August 18 SEE MORE >>>Same-Slide Spatial Multi-Omics Integration Reveals Tumor Virus-Linked Spatial Reorganization of the Tumor Microenvironment
Yao Yu Yeo*, Yuzhou Chang*, Huaying Qiu*, Stephanie Pei Tung Yiu**, Hendrik A Michel**, Wenrui Wu, Xiaojie Jin, Shoko Kure, Lindsay Parmelee, Shuli Luo, Precious Cramer, Jia Le Lee, Yang Wang, Jason Yeung, Nourhan El Ahmar, Berkay Simsek, Razan Mohanna, McKayla Van Orden, Wesley Lu, Kenneth J Livak, Shuqiang Li, Jahanbanoo Shahryari, Leandra Kingsley, Reem N Al-Humadi, Sahar Nasr, Dingani Nkosi, Sam Sadigh, Philip Rock, Leonie Frauenfeld, Louisa Kaufmann, Bokai Zhu, Ankit Basak, Nagendra Dhanikonda, Chi Ngai Chan, Jordan Krull, Ye Won Cho, Chia-Yu Chen, Jia Ying Joey Lee, Hongbo Wang, Bo Zhao, Lit-Hsin Loo, David M Kim, Vassiliki Boussiotis, Baochun Zhang, Alex K Shalek, Brooke Howitt, Sabina Signoretti, Christian M Schürch, F Stephan Hodi, W Richard Burack, Scott J Rodig, Qin Ma#, Sizun Jiang#
bioRxiv. 2024 Dec 22:2024.12.20.629650. doi: 10.1101/2024.12.20.629650.
2025 August 18 SEE MORE >>>SARS-CoV-2 Nsp15 antagonizes the cGAS-STING-mediated antiviral innate immune responses
Hsin-Ping Chiu, Yao Yu Yeo, Tsoi Ying Lai, Chuan-Tien Hung, Shreyas Kowdle, Griffin D Haas, Sizun Jiang, Weina Sun, Benhur Lee
bioRxiv. 2024 Sep 5:2024.09.05.611469. doi: 10.1101/2024.09.05.611469.
2025 August 18 SEE MORE >>>Graph Fourier transform for spatial omics representation and analyses of complex organs
Yuzhou Chang, Jixin Liu, Yi Jiang, Anjun Ma, Yao Yu Yeo, Qi Guo, Megan McNutt, Jordan E Krull, Scott J Rodig, Dan H Barouch, Garry P Nolan, Dong Xu, Sizun Jiang, Zihai Li, Bingqiang Liu, Qin Ma
Nat Commun . 2024 Aug 29;15(1):7467
2025 August 18 SEE MORE >>>